# TCGAbiolinks Environment

```r id=f8b153d3-0d9d-4f80-8951-6c17064255ea
install.packages("BiocManager")
```

```r id=e611c323-ddf0-42a1-972f-b3c02c547758
BiocManager::install(c("TCGAbiolinks", "SummarizedExperiment"))
```

```r id=b6322d99-9c20-48c2-9fde-7ff541c97646
BiocManager::available()
```


<details id="com.nextjournal.article">
<summary>This notebook was exported from <a href="https://nextjournal.com/a/KoHWJZaAnUFTpA6Wu4sHn?change-id=CQASsYyYyv4wFi3g6BT8e4">https://nextjournal.com/a/KoHWJZaAnUFTpA6Wu4sHn?change-id=CQASsYyYyv4wFi3g6BT8e4</a></summary>

```edn nextjournal-metadata
{:article
 {:settings nil,
  :nodes
  {"25408d2b-1f71-4bcc-b9d3-fb320f92e378"
   {:environment
    [:environment
     {:article/nextjournal.id
      #uuid "5b45e6f7-fe51-488a-b89b-1c8f74dfb387",
      :change/nextjournal.id
      #uuid "5c113f46-51c2-45f9-b82c-0ceb43e15ee5",
      :node/id "4e307b44-52c3-4f79-9f3d-23047859e2fa"}],
    :environment? true,
    :id "25408d2b-1f71-4bcc-b9d3-fb320f92e378",
    :kind "runtime",
    :language "r",
    :name "TCGAbiolinks",
    :type :nextjournal,
    :docker/environment-image
    "docker.nextjournal.com/environment@sha256:99dc47dab2aed5779bd18980d02ed23e71bcc10c25afb857a3a6a50543bc2393"},
   "b6322d99-9c20-48c2-9fde-7ff541c97646"
   {:compute-ref #uuid "ac920937-59f4-4b55-987b-00e71f98cb46",
    :exec-duration 2659,
    :id "b6322d99-9c20-48c2-9fde-7ff541c97646",
    :kind "code",
    :output-log-lines {:stdout 0},
    :runtime [:runtime "25408d2b-1f71-4bcc-b9d3-fb320f92e378"]},
   "e611c323-ddf0-42a1-972f-b3c02c547758"
   {:compute-ref #uuid "617d466a-dda2-44eb-bb87-7301445edc6b",
    :exec-duration 1656729,
    :id "e611c323-ddf0-42a1-972f-b3c02c547758",
    :kind "code",
    :output-log-lines {:stdout 8724},
    :runtime [:runtime "25408d2b-1f71-4bcc-b9d3-fb320f92e378"],
    :stdout-collapsed? false},
   "f8b153d3-0d9d-4f80-8951-6c17064255ea"
   {:compute-ref #uuid "575275d1-c347-4703-9608-9dc4b2c07314",
    :exec-duration 4271,
    :id "f8b153d3-0d9d-4f80-8951-6c17064255ea",
    :kind "code",
    :output-log-lines {:stdout 21},
    :runtime [:runtime "25408d2b-1f71-4bcc-b9d3-fb320f92e378"]}},
  :nextjournal/id #uuid "029fe967-e303-4dd2-9fa8-a63f63564e6d",
  :article/change
  {:nextjournal/id #uuid "5c50740c-447b-4099-82f5-b5bf2ca858f1"}}}

```
</details>